A short tutorial on using PGA for protein identification based on the database derived from RNA-Seq data
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customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search
UNLABELLED Database search is the most widely used approach for peptide and protein identification in mass spectrometry-based proteomics studies. Our previous study showed that sample-specific protein databases derived from RNA-Seq data can better approximate the real protein pools in the samples and thus improve protein identification. More importantly, single nucleotide variations, short inse...
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